Performance analysis of pure MPI versus MPI+OpenMP for Jacobi Iteration and a 3D FFT on the Cray XT5

نویسندگان

  • Glenn Luecke
  • Olga Weiss
  • Marina Kraeva
  • James Coyle
  • James Hoekstra
چکیده

Today many high performance computers are collections of shared memory compute nodes with each compute node having one or more multi-core processors. When writing parallel programs for these machines, one can use pure MPI or various hybrid approaches using MPI and OpenMP. Since OpenMP threads are lighter weight than MPI processes, one would expect that hybrid approaches will achieve better performance and scalability than pure MPI. In practice this is not always the case. This paper investigates the performance and scalability of pure MPI versus hybrid MPI+OpenMP for Jacobi iteration and for a 3D FFT on the Cray XT5.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

A Hybrid MPI/OpenMP 3D FFT for Plane Wave First-principles Materials Science Codes

First principles electronic structure calculations based on a plane wave expansion of the wavefunctions are the most commonly used approach for electronic structure calculations in materials and nanoscience. In this approach the electronic wavefunctions are expanded in Fourier components and 3D FFTs are used to construct the charge density in real space. Efficient parallel 3D FFTs are required ...

متن کامل

Communication Characteristics and Hybrid MPI/OpenMP Parallel Programming on Clusters of Multi-core SMP Nodes

Hybrid MPI/OpenMP and pure MPI on clusters of multicore SMP nodes involve several mismatch problems between the parallel programming models and the hardware architectures. Measurements of communication characteristics between cores on the same socket, on the same SMP node, and between SMP nodes on several platforms (including Cray XT4 and XT5) show that machine topology has a significant impact...

متن کامل

CP2K Performance from Cray XT3 to XC30

CP2K is a powerful open-source program for atomistic simulation using a range of methods including Classical potentials, Density Functional Theory based on the Gaussian and Plane Waves approach, and post-DFT methods. CP2K has been designed and optimised for large parallel HPC systems, including a mixed-mode MPI/OpenMP parallelisation, as well as CUDA kernels for particular types of calculations...

متن کامل

Performance analysis of asynchronous Jacobi's method implemented in MPI, SHMEM and OpenMP

Ever-increasing core counts create the need to develop parallel algorithms that avoid closelycoupled execution across all cores. In this paper we present performance analysis of several parallel asynchronous implementations of Jacobi’s method for solving systems of linear equations, using MPI, SHMEM and OpenMP. In particular we have solved systems of over 4 billion unknowns using up to 32,768 p...

متن کامل

Parallel computing using MPI and OpenMP on self-configured platform, UMZHPC.

Parallel computing is a topic of interest for a broad scientific community since it facilitates many time-consuming algorithms in different application domains.In this paper, we introduce a novel platform for parallel computing by using MPI and OpenMP programming languages based on set of networked PCs. UMZHPC is a free Linux-based parallel computing infrastructure that has been developed to cr...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2010